![]() Anybody know how to get the full annotation from a reference genome onto a consensus in CLC Genomics Work bench?I'd ask the company (CLC) directly - sometimes export options are obvious in the CLC products. Choose where you would like to create shortcuts for launching CLC Sequence Viewer. Get SNP report and realize that the most useful comparator data in the SNP table is not there, specifically the PAxxx gene numbers used in updated Pseudomonas annotations ( When I look at the consensus sequence copied over from step #1, it looks like the PAxxx numbers are there, but the SNP report and the assembly in step 2 does not include them. Choose if CLC Sequence Viewer should be used to open CLC files and click Next. Anybody know how to get the full annotation from a reference genome onto a consensus in CLC Genomics Work bench?ģ. Get SNP report and realize that the most useful comparator data in the SNP table is not there, specifically the PAxxx gene numbers used in updated Pseudomonas annotations ( When I look at the consensus sequence copied over from step #1, it looks like the PAxxx numbers are there, but the SNP report and the assembly in step 2 does not include them. Assemble the late strain against the Early genome, and then do SNP report.ģ. Copy the annotations onto the consensus sequence and save that as my Early genome.Ģ. Assemble the early strain against annotated reference genome. My problem is that I can do the assemblies just fine against a reference genome or de novo, but I cannot get good annotation files to do SNP analysis. aeruginosa and do SNP analysis between strains that have evolved overtime. ![]() I am trying to assemble illumina reads from clinical isolates of P. Welcome to CLC Sequence Viewer 7.6.1 - a software package supporting your daily bioinformatics work.I'm having a little problem with my analysis using CLC tools. 1.5 When the program is installed: Getting started 1.5.1 Quick start. 1.2.5 Installation on Linux with an RPM-package 1.3 System requirements. 1.2.4 Installation on Linux with an installer. Introduction to CLC Sequence Viewer Contents 1.1 1.2Ĭontact information. 208ĭ Restriction enzymes database configuration 182 16 Phylogenetic treesġ6.1 Phylogenetic tree features. 180 15.4 Bioinformatics explained: Multiple alignments. 172 15 Sequence alignmentġ5.1 Create an alignment. 163 14.2 Restriction site analysis from the Toolbox. 160 14 Restriction site analysesġ4.1 Dynamic restriction sites. 157 13.5 Translation of DNA or RNA to protein. 155 13.3 Reverse complements of sequences. 153 13 Nucleotide analysesġ3.1 Convert DNA to RNA. Does anyone know how can I do that Actually I can not see '' add annotation'' dialog in workbench. 139 12 General sequence analysesġ2.1 Extract sequences. I have a sequence of my construct in CLC Sequence Viewer and I want to change the name of annotation and add another annotation to the construct sequence. 137 10.5 Tools for linking sequence and structure. 129 10.4 Snapshots of the molecule visualization. 127 10.2 Viewing molecular structures in 3D. You can create and edit alignments, work with interactive restriction site analysis, phylogenetics, or advanced DNA to protein translation, or you can use the integrated GenBank search options and many other features. 123ġ0.1 Importing molecule structure files. CLC Sequence Viewer includes a number of features for doing basic bioinformatics analysis. Selecting which part of the view to print. When the program is installed: Getting started. QIAGEN Aarhus A/S Silkeborgvej 2 Prismet DK-8000 Aarhus C DenmarkĬontact information. CLC Sequence Viewer 7.6.1 Windows, Mac OS X and Linux SeptemThis software is for research purposes only.
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